Genome sequence analysis with MonetDB
نویسندگان
چکیده
منابع مشابه
Genome sequence analysis with monetdb: a case study on ebola virus diversity
Next-generation sequencing (NGS) technology has led the life sciences into the big data era. Today, sequencing genomes takes little time and cost, but yields terabytes of data to be stored and analyzed. Biologists are often exposed to excessively time consuming and error-prone data management and analysis hurdles. In this paper, we propose a database management system (DBMS) based approach to a...
متن کاملGenome Sequence Analysis
The human genome has approximately 3.5 billion base pairs (bp) and is an excellent example for the analysis of eukaryotic genomes. The goal of genome research is to sequence each one of these base pairs so that all the genes and regulatory regions in the genome can be located. This information can then be used to facilitate discoveries in the basic and clinical sciences. Thus, the aim of most l...
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Problem statement: Sequence analysis problems are NP hard and need optimal solutions. Interesting problems include duplicate sequence detection, sequence matching by relevance, sequence analysis using approximate comparison in general or using tools i.e., Matlab and multi-lingual sequence analysis. The usefulness of these operations is highlighted and future expectations are described. Approach...
متن کاملGenome-tools: a flexible package for genome sequence analysis.
Genome-tools is a Perl module, a set of programs, and a user interface that facilitates access to genome sequence information. The package is flexible, extensible, and designed to be accessible and useful to both nonprogrammers and programmers. Any relatively well-annotated genome available with standard GenBank genome files may be used with genome-tools. A simple Web-based front end permits se...
متن کاملAutomated genome sequence analysis and annotation
MOTIVATION Large-scale genome projects generate a rapidly increasing number of sequences, most of them biochemically uncharacterized. Research in bioinformatics contributes to the development of methods for the computational characterization of these sequences. However, the installation and application of these methods require experience and are time consuming. RESULTS We present here an auto...
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ژورنال
عنوان ژورنال: Datenbank-Spektrum
سال: 2015
ISSN: 1618-2162,1610-1995
DOI: 10.1007/s13222-015-0198-x